To sabotage a powerful Separatist weapon, Obi-Wan and a small clone force enter an occupied town , and discover that its residents are being used as a living shield. With his forces stretched thin, Mace Windu must convince Twi'lek freedom fighter Cham Syndulla to help him save the capital city from the droids ' destruction.
It's up to Ahsoka , Anakin and Obi-Wan to stop the bounty hunter from escaping with the valuable Jedi artifact. Anakin and Ahsoka intercept Cad Bane 's warship , hoping to recover the stolen Jedi Holocron , but the Jedi underestimate the bounty hunter 's cunning tactics. Darth Sidious has a new dark assignment: kidnap Force -sensitive children from across the galaxy and bring them to Mustafar. Anakin , Obi-Wan and Ahsoka form an uneasy partnership with four deadly bounty hunters to help protect a local spice farmer from Hondo Ohnaka and his band of pirates.
The Republic 's new super-weapon awakens the fearsome Zillo Beast of Malastare. Now the Jedi have a new problem on their hands -- how to contain the deadly creature. Republic forces bring the Zillo Beast back to Coruscant for study. When it escapes, the Jedi must choose between saving millions of lives and destroying the Zillo Beast, the last of its kind.
Luminara and Anakin act as decoys to divert new enemy super tanks , while Padawans Barriss Offee and Ahsoka attempt to destroy a Separatist droid factory. When the search leads to a mysterious lair , the Jedi are faced with a horde of undead warriors. When Geonosian brain worms take control of their supply ship, Ahsoka and Barriss must battle to stop the vessel from unleashing the deadly plague upon the galaxy.
A Jedi Master is taken hostage and tortured by General Grievous. Anakin , Obi-Wan and Adi Gallia devise a daring rescue plan, but they soon realize the General has a plan of his own. While searching for General Grievous on a distant planet , Rex encounters a deserter. When a wily pickpocket steals Ahsoka 's lightsaber , she enlists the help of an ancient Jedi to track down her weapon and reclaim her honor.
While investigating rumors of conspiracy surrounding Duchess Satine of Mandalore , Obi-Wan uncovers the truth about a mysterious Mandalorian plot.
As the Jedi and their clones defend Duchess Satine from assassination attempts, Anakin discovers that Obi-Wan and the Duchess have a history together. On the run from Republic authorities, Satine and Obi-Wan set off to discover the group's true motives. A young boy wages war against the Jedi Knights who left him orphaned, bitter and alone. When a band of bounty hunters leads Anakin and Mace into a deadly trap on Vanqor , it's up to R2-D2 to battle his way back to Coruscant and warn the Jedi.
After combing the Coruscant underworld for a young fugitive , Plo Koon and Ahsoka pursue him to Florrum for a climactic confrontation. Ahsoka is assigned to teach a class at the cadet academy on Mandalore.
Soon after she arrives, Duchess Satine 's zealous nephew and his classmates uncover a nefarious plot. The Separatists launch a major attack on the Republic cloning facilities on Kamino. Chairman Papanoida 's family is kidnapped and held for ransom. Ahsoka must team up with the Senator from Pantora , Riyo Chuchi , to aid the new chairman in recovering his family before the Trade Federation can unduly influence the future of his planet.
Bane is looking for information about the Senate building and soon both C-3PO and R2-D2 find themselves trapped and tools of a plan that neither understands. To free crime lord Ziro the Hutt , bounty hunters seize control of the Senate Building and take hostages -- completely unaware that Jedi Knight Anakin Skywalker is still inside.
Cad Bane has broken Ziro the Hutt out of prison and the Hutt Council demands that Ziro tell them where he's hidden vital -- and incriminating -- information. Ziro makes another daring escape with the help of Sy Snootles , and Bane is back on the Hutt's trail -- but he's not the only one.
Now it's a race to get to Ziro before it's too late. Their opposition to the measure, however, soon makes them targets for intimidation and attacks by hired guns. Darth Sidious , troubled by Ventress 's growing prowess with the dark side of the Force , commands Count Dooku to eliminate her.
When Ventress survives Dooku's assassination attempt, the jilted former apprentice vows to take revenge, enlisting her kinswomen -- the Nightsisters of Dathomir -- in her scheme. When Count Dooku calls upon the Nightsisters seeking a replacement for Ventress , she and her kin seize the opportunity to exact revenge. Ventress visits the far side of Dathomir and the males of the planet seeking the most brutal and powerful warrior among them.
Through their witchcraft , the Nightsisters transform Savage Opress into a monstrous killer designed to turn on his new master. Anakin and Obi-Wan , sent to track down the mysterious figure behind the deaths of several Jedi , soon find themselves on the trail of the monstrous apprentice that Ventress has created: Savage Opress.
However, Dooku and Ventress also discover that this new apprentice has a will of his own A mysterious force draws Anakin , Obi-Wan and Ahsoka to a distant planet , and its inhabitants -- a family of exceptionally powerful Force-wielders -- in an attempt to determine whether Anakin is truly the Chosen One. Before the Jedi can leave Mortis , the Son takes Ahsoka captive in an attempt to entice Anakin into joining him to use their combined strength to overpower his Father and Sister. Meanwhile, the Father attempts to stave off a disastrous showdown between his children and maintain the Force 's increasingly precarious balance on the planet.
The Jedi remain stranded on Mortis , and the Son aligned with the dark side of the Force renews his efforts to convert Anakin as the Jedi prepare for a decisive confrontation.
With help from R2-D2 and a squad of captured battle droids , an elite team of Jedi and clone troopers led by Obi-Wan and Anakin attempt to free a captive Jedi general , Even Piell , from an impenetrable prison. With freed prisoners in their possession and the brutal warden attempting desperately to thwart them, Obi-Wan and Anakin search for a way out of the Citadel and back to Coruscant.
The prison, however, has more traps, perils and pitfalls in store for them than they had imagined and they must work past their differences if they are to escape. After their ship and the only way off-planet is destroyed, Anakin and Obi-Wan must lead the escaped prisoners across Lola Sayu 's perilous landscape as Plo Koon leads a Republic strike force through the Separatist defenses.
Ahsoka finds herself trapped on a Trandoshan moon , prey in an elaborate and cruel hunt. As Ahsoka and her allies struggle to evade the Trandoshan hunters, their efforts receive an unexpected boost when a new captive -- Chewbacca the Wookiee -- arrives. When the king of Mon Cala is assassinated, talks break down between the Mon Calamari people and the Quarren , co-inhabitants of the aquatic world.
Anakin Skywalker and the rest of his Jedi team have been overrun by the Separatist surprise attacks led by Riff Tamson while Prince Lee-Char and Ahsoka must evade capture on their own.
Unable to summon more Republic aid, Yoda calls upon the help of the powerful and amphibious Gungan Grand Army , but whether they will be enough to stop the Separatist siege is uncertain. An incensed Tamson doubles his efforts in tracking down Prince Lee-Char, unleashing the reinforcements given to him by Count Dooku in an assault that churns the oceans. When the leader of the Gungans , Boss Lyonie , is injured it's discovered there is an uncanny resemblance between the Boss and Jar Jar Binks.
Binks must sway his people from rising against the Naboo and stopping a Separatist invasion led by General Grievous. When the native Aleena 's pleas go unheard, it becomes the duty of the droids to embark on a surreal journey through Aleen's subterranean world to save the planet. C-3PO and R2-D2 's bizarre caper continues. Forced to escape a Separatist attack in a Y-wing fighter , the droids visit the world of the Patitites , the odd planet Balnab , and the inside of a pirate warship where they are forced to fight in a gladiatorial arena.
When Anakin is forced to temporarily turn over command of his clone troopers to a new commander , the Jedi Pong Krell , tensions begin to run high as the clones are assigned with a very deadly mission to take the capital of Umbara. General Krell orders Captain Rex and the clone troopers of the st Legion to conquer a heavily fortified Umbaran airbase , and will not accept anything less than victory.
It is an almost certain suicide mission, unless the clones can use their ingenuity to defeat their new enemy. After the Republic conquers an Umbaran airbase , General Krell orders Rex and his men on towards the heavily fortified capital.
Realizing there's a better plan, several clone troopers disobey orders to carry out a rogue, covert operation. With two of his men facing execution for disobeying orders, Captain Rex must confront his overly aggressive commander , General Krell. Risking charges of mutiny, Rex must make a dark choice as the true face of the enemy emerges.
Zygerrian slavers are behind the sudden disappearance of an entire colony of people on the planet Kiros. As Anakin and Ahsoka rush to defuse a series of bombs planted by the slavers, Obi-Wan must fight with their imposing leader.
To locate the missing colonists , Anakin , Obi-Wan and Ahsoka go undercover to infiltrate the slavers on Zygerria. Anakin struggles with his emotions as a wily Zygerrian queen forces him to take questionable actions in order to carry out his mission. Anakin tries to convince the Zygerrian Queen that she too is a slave and pawn in an evil Separatist plot. Meanwhile, Obi-Wan toils in the slave camps of Kadavo , a grim situation that grows increasingly bleak.
A peace conference between Separatists and Republic delegates is interrupted by Lux Bonteri , the son of a late Separatist Senator , who involves Ahsoka in his dangerous search to find justice for his mother's death. When the Jedi learn of a Separatist plot to kidnap Chancellor Palpatine , one of them must go deep undercover as a hardened criminal to extract information from the conspirators. Fleeing across the galaxy with criminal fugitives, a disguised Obi-Wan , Cad Bane and Moralo Eval are tenaciously pursued by Anakin and Ahsoka , who have no idea they're chasing their friend.
The disguised Obi-Wan accompanies Cad Bane and Moralo Eval to Serenno , where they enlist in a brutal competition with other bounty hunters from around the galaxy to determine who will participate in a plot to kidnap the Chancellor. The Chancellor travels to Naboo to preside over a public ceremony , guarded by Jedi Knights.
Dooku and his bounty hunters -- including an undercover Obi-Wan Kenobi -- launch their kidnapping plot. Count Dooku is determined to have revenge against the Nightsisters of Dathomir after their betrayal. General Grievous launches an all-out droid attack against the magic-wielding witches, and Mother Talzin and Asajj Ventress lead the defense with all the dark powers at their command.
An aimless Asajj Ventress joins a team of bounty hunters under the leadership of young Boba Fett. On an alien world , they undertake a dangerous but profitable mission that tests the limits of their skills, and the strength of Asajj's character. The dark warrior Savage Opress is on a quest to find his long-lost brother.
Could Darth Maul truly be alive, after more than a decade since his gruesome bisection at the blade of Obi-Wan Kenobi? Savage voyages into the depths of a twisted planet to find whatever became of the fallen Sith Lord. Savage and Maul , now reunited, pursue Obi-Wan Kenobi in search of revenge, and the Jedi Knight finds himself forced to unite with a surprising ally to defend against the deadly siblings.
There, they will train a group of insurgent rebels -- including Lux Bonteri -- to help take back the capital city of Iziz from the rule of a duplicitous king. Supervised by Ahsoka , the Onderon rebels infiltrate the capital and carry out a series of strikes on targets throughout the city. As the Separatist -aligned king comes under increasing pressure to deal with the growing rebellion, the rebels choose a new leader.
After a rebel attempt to rescue Onderon 's true king, Ramsis Dendup , an unexpected ally steps forward to halt Dendup's execution and aid the rebel cause. As a full-scale revolt embroils Onderon , the rebels strike a decisive blow against the planet's Separatist -aligned king. Unfortunately for the rebels, such victory comes at a high price. Ahsoka escorts a group of younglings to Ilum , where they will learn from Yoda and undergo a crucial rite of passage: the construction of their lightsabers.
They grapple with both physical and inner challenges as they face the dangerous task ahead of them. As the younglings return from Ilum with Ahsoka , their ship comes under attack by Hondo 's gang of pirates. The children must use ingenious and improvised traps to thwart the brigands. With Ahsoka captured by Hondo 's pirates , the younglings work together to infiltrate the pirates ' den , using their wits and courage to deceive Hondo Ohnaka and launch a daring rescue.
When General Grievous launches a full-scale attack on the pirate base on Florrum , Ahsoka and the younglings fight side-by-side with Hondo and his pirates to turn back the Separatist forces.
R2-D2 is part of a team of Republic droids chosen for an important mission led by the diminutive Colonel Gascon to obtain an encryption module from a Separatist dreadnought.
The droids must overcome numerous challenging obstacles to succeed in this crucial assignment. After a comet damages their shuttle, R2-D2 , Colonel Gascon , and the other droids crash on a desolate planet where they must make their way across a bewildering expanse of emptiness to carry out their mission. In a nearly vacant town , R2-D2 and his team find a clone commando suffering from amnesia. R2-D2 and his team must stop a sabotaged Jedi cruiser from destroying a crucial Republic conference.
Fueled by vengeance and rage, the newly reunited brothers Savage Opress and Maul spread terror and violence across the galaxy. Backed by the criminal underworld , the Sith and Death Watch launch an attack on Mandalore.
Anakin and Ahsoka investigate a deadly bombing at the Jedi Temple. As the Republic military takes over the Temple bombing case, Ahsoka finds herself at odds with Admiral Tarkin. The fugitive Ahsoka escapes to the criminal depths of Coruscant.
On trial for murder, Ahsoka faces her greatest challenge. Clone trooper Tup succumbs to a mysterious mental illness that results in the shocking death of a Jedi Master. Unable to account for his murderous actions, Tup is sedated and sent back to Kamino for examination. Meanwhile, Admiral Trench of the Separatists informs Count Dooku of the betrayal, and is convinced that the killing stems from something deeper.
With the help of medical droid AZI-3 , Fives is determined to get to the bottom of Tup's condition and uncovers a secret buried deep within the Republic 's cloning program. The body of clone trooper Tup is scheduled for transport to Coruscant , where Chancellor Palpatine 's own doctors will closely examine it. After the arena battle, Mace Windu has to lead a group of elite clone troopers to take out the Separatist ships, including some Techno union and Trade Federation core ships.
After taking out the escaping separatist ships, Mace Windu encounters three Dark Acolytes and managed to destroy them. The Republic forces on Rhen Var had to be evacutated after a separatist attack. The Jedi , Obi-Wan Kenobi and Anakin Skywalker manned Republic Gunships and other vehicles in the attempt to slow the separatist attack and to rescue various other Jedi. As the evacuation ends, the Confederacy begins to destroy the Republic outpost.
The separatist attack on Rhen Var was part of Count Dooku 's plot to gain control of the Dark Reaper , however the Jedi do not realize this until after the evacuation. One month after the start of the Clone Wars , and shortly after the evacuation on Rhen Var , Republic intelligence spies find unusual separatist movement on the waste planet, Raxus Prime.
A small team of clones were assembled and were led by Anakin Skywalker and Obi-Wan Kenobi to investigate the reasons behind the separatist movement.
Anakin and Obi-Wan scout the nearby surroundings of their landing zone and encounter an enemy scout party. After destroying the scout party they locate a separatist excavation site and contact the commander for reinforcements. They then destroy enemy supply bases in an attempt to delay the separatist whilst they wait for reinforcements.
After some time reinforcements land and they fight their way to the excavation site, where there is a second group of Republic forces ready to ambush the enemy base. They destroy the shield generator allowing all of their forces to enter the battlefield at the same time and overwhelm defenders. At this point Count Dooku escapes the battle by fleeing in his ship. Anakin sees this and tries to intercept him. After the Seperatist main ships retreat, the Confederates unleash their deadliest machine yet, the Protodeka.
The Protodeka destroys most of the Republic forces with a suprise attack, forcing Obi-Wan to single-handedly fight the machine and destroy it. By the end of the battle Dooku's ship has already left the system as had Anakin and another part of the Dark Reaper.
Anakin and the other prisoners, including the mercenary Bera Kazan , are to be executed by the Force Harvester , an ancient Sith weapon that drains the Force from all living things, and is also a part of the Dark Reaper.
Anakin used the Force to break free from his cell, along with the mercenary Bera. After freeing the other condemned prisoners they stole two Single Trooper Aerial Platforms. Seconds later, the Harvester becomes fully charged and began to absorb the Force from moon's forest, it destroyed half of the moon's forests as Anakin and Bera were trying to escape from the Harvester's blast radius.
Eventually, they passed through a small Wookiee village and reached a safe area out of the blast radius of the Force Harvester. The CIS had jammed all planetary communications so Anakin and Bera had to reach the communication jammer in order to alert the Republic forces to their location.
The CIS then attacked the single remaining Wookiee village on the moon so, with the use of traps, Anakin and Bera blocked the droid forces from reaching the village. However, they were unable to set traps and defend the north of the village where the main section of the enemy's army is entering. They were forced to defend the village in their vehicle until Obi-Wan Kenobi arrived with Republic forces. Then they were able to defeat the Separatist armies and followed them as they retreated to their dropship, the Harbinger.
Bera survived the battle and went elsewhere whilst the Wookiees also had to move elsewhere after the destruction of their homes. They then returned to Rhen Var in an attempt to look at the teachings of Ulic Qel-Droma , the only person able to withstand the Force Harvester.
Due to this, Obi-Wan and Anakin launch an assault on the planet with Anakin fighting in the air and Obi-Wan on the ground. Using the Force, Anakin is able to break free from his cell, along with Bera. After freeing the other prisoners they escape on stolen Single Trooper Aerial Platforms. Moments later, the Harvester becomes fully charged and begins absorbing power from the moon's forest. Anakin and Bera navigate through the terrain to escape from the Harvester's blast radius.
Eventually, they pass through a small Wookiee village it is up to the player, whether to alert them of the danger coming their way , and the Force Harvester's power starts to recede. Anakin and Bera retreat to a hidden Wookiee village where they learn that the CIS has jammed all planetary communications. Together they devise a plan to contact the Republic. Shortly afterwards, the CIS attack the single remaining Wookiee village on the moon. With the use of traps, Anakin and Bera are able to block enemy reinforcements coming in through the canyons.
However, they are unable to set up traps north of the village where the bulk of the enemy's army is entering. They are forced to hold off the enemy until the Republic fleet arrives. During the battle, Republic forces with Obi-Wan in charge of the attack arrive and are able to chase off the CIS army.
Anakin and Obi-Wan trace the army back to its source: a Separatist dropship called the Harbinger. Together they destroy the Harbinger, severing the endless flow of CIS war machines.
Bera survives the battle but her fate is unknown. The forests were reduced to waste by the Force Harvester and the multiple battles, forcing the native Wookiees to leave and find a new home.
Windu reveals to Anakin and Obi-Wan that during the Great Sith War , the Sith constructed a weapon so powerful that no one could withstand it. It was called the Dark Reaper , and it required tremendous amounts of energy to function. The Force Harvester gathered the required energy for the Reaper, allowing it to work. He taught others how to do it also, and the Jedi were able to defeat the Dark Reaper. After the war, the Jedi scattered the remaining pieces of the Dark Reaper to the far corners of the Galaxy and Anakin quickly works out that Dooku has now found those pieces; Windu tells them that if Dooku successfully reactivates the Dark Reaper, then they won't stand a chance against it.
He also says that, after the war, Qel-Droma sought refuge on Rhen Var, which is also where his tomb is located. Knowing that's the one place they need to go in order to learn how to defeat the Dark Reaper, Obi-Wan and Anakin prepare a strike force to retake Rhen Var. The sheer force of the attack overwhelms the Confederates, and Obi-Wan is able to lead his forces to the temple.
He defeats them and Qel-Droma appears before him, telling him that he's passed the tests. He tells Anakin he can teach him how to defeat the Dark Reaper but warns him that the power comes with great risk of him falling to the dark side.
Based on the information Anakin has given them, they prepare their attack. Anakin and his strike force take out the planetary shield on the Thule moon, Sivvi.
He destroys the Command Installation to cripple the Separatists' communications. Windu then commands the ground forces around Thule's capital city of Kessiak. Windu is forced to travel on foot to open the gates to the Sith Temple. Finally, Anakin and his strike force enter the Sith Temple. Anakin then kills Cydon Prax, allowing him to press forward.
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